ExecutionTimeLimit problem

Hello, I have a script that updates OpenCart's database with products selected from other database. When I run the script( some time ago worked perfectly ) is looks like it is loading but after 40-50 seconds OpenCart says "The page was not found". I tought the problem was with the Execution Time Limit and put set_time_limit(600) at the top of my script => same problem. I have also created a .htaccess file and set it there( with the proper syntax ) but it still doesn't work.
Thanks.

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